1. Round | 08/08/2016 | VfB Stuttgart | - | FC St. Pauli | 2:1 | ||||
3. Round | 28/08/2016 | Dynamo Dresden | - | FC St. Pauli | 1:0 | ||||
4. Round | 10/09/2016 | FC St. Pauli | - | Arminia Bielefeld | 2:1 | ||||
5. Round | 18/09/2016 | Karlsruher SC | - | FC St. Pauli | 1:1 | ||||
6. Round | 22/09/2016 | FC St. Pauli | - | TSV 1860 München | 2:2 | ||||
10. Round | 22/10/2016 | SV Sandhausen | - | FC St. Pauli | 3:0 | ||||
11. Round | 31/10/2016 | FC St. Pauli | - | 1. FC Nürnberg | 1:1 | ||||
13. Round | 20/11/2016 | FC St. Pauli | - | Fortuna Düsseldorf | 0:1 | ||||
14. Round | 26/11/2016 | 1. FC Heidenheim 1846 | - | FC St. Pauli | 2:0 | ||||
15. Round | 02/12/2016 | FC St. Pauli | - | 1. FC Kaiserslautern | 0:0 | ||||
16. Round | 11/12/2016 | SpVgg Greuther Fürth | - | FC St. Pauli | 0:2 | ||||
17. Round | 17/12/2016 | FC St. Pauli | - | VfL Bochum | 1:1 | ||||
21. Round | 19/02/2017 | Arminia Bielefeld | - | FC St. Pauli | 1:1 | ||||
24. Round | 10/03/2017 | FC St. Pauli | - | 1. FC Union Berlin | 1:2 | ||||
29. Round | 16/04/2017 | FC St. Pauli | - | Würzburger Kickers | 1:0 | ||||
33. Round | 14/05/2017 | FC St. Pauli | - | SpVgg Greuther Fürth | 1:1 | ||||
34. Round | 21/05/2017 | VfL Bochum | - | FC St. Pauli | 1:3 |