| 16. Round | 08/03/2025 | FK Mladá Boleslav [Youth] | - | 1. FC Slovácko [Youth] | 5:0 | ||||
| 17. Round | 14/03/2025 | FC Zlín [Youth] | - | FK Mladá Boleslav [Youth] | 7:2 | ||||
| 18. Round | 22/03/2025 | FK Mladá Boleslav [Youth] | - | Sigma Olomouc [Youth] | 0:2 | ||||
| 19. Round | 28/03/2025 | FC Zbrojovka Brno [Youth] | - | FK Mladá Boleslav [Youth] | 1:1 |  |
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| 20. Round | 05/04/2025 | FK Mladá Boleslav [Youth] | - | Banik Ostrava [Youth] | 0:2 | |
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| 21. Round | 12/04/2025 | Dynamo České Budějovice [Youth] | - | FK Mladá Boleslav [Youth] | 4:2 | ||||
| 22. Round | 18/04/2025 | FK Mladá Boleslav [Youth] | - | FK Dukla Praha [Youth] | 2:2 | ||||
| 23. Round | 29/04/2025 | Viktoria Plzeň [Youth] | - | FK Mladá Boleslav [Youth] | 2:2 | ||||
| 24. Round | 03/05/2025 | FK Mladá Boleslav [Youth] | - | Vysočina Jihlava [Youth] | 3:1 |
Czech Republic
North Macedonia