| 3. Round | 01/03/2025 | V-Varen Nagasaki | - | Júbilo Iwata | 1:0 | ||||
| 4. Round | 08/03/2025 | Vegalta Sendai | - | V-Varen Nagasaki | 1:1 | ||||
| 7. Round | 30/03/2025 | Fujieda MyFC | - | V-Varen Nagasaki | 3:2 |  |
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| 8. Round | 06/04/2025 | FC Imabari | - | V-Varen Nagasaki | 4:1 | ||||
| 10. Round | 19/04/2025 | Ventforet Kofu | - | V-Varen Nagasaki | 1:1 | ||||
| 11. Round | 25/04/2025 | V-Varen Nagasaki | - | Iwaki FC | 3:4 | ||||
| 12. Round | 29/04/2025 | Hokkaido Consadole Sapporo | - | V-Varen Nagasaki | 2:2 | ||||
| 13. Round | 03/05/2025 | V-Varen Nagasaki | - | Ehime FC | 1:1 | ||||
| 14. Round | 06/05/2025 | Kataller Toyama | - | V-Varen Nagasaki | 1:2 |
Japan