| 16. Round | 02/03/2024 | FK Mladá Boleslav [Youth] | - | 1. FC Slovácko [Youth] | 2:1 | ||||
| 17. Round | 09/03/2024 | 1. FC Slovácko [Youth] | - | Slovan Liberec [Youth] | 2:1 |  |
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| 18. Round | 15/03/2024 | FC Zbrojovka Brno [Youth] | - | 1. FC Slovácko [Youth] | 2:0 | ||||
| 23. Round | 20/04/2024 | 1. FC Slovácko [Youth] | - | Viktoria Plzeň [Youth] | 2:1 | ||||
| 24. Round | 27/04/2024 | AC Sparta Praha [Youth] | - | 1. FC Slovácko [Youth] | 1:3 | ||||
| 25. Round | 04/05/2024 | Sigma Olomouc [Youth] | - | 1. FC Slovácko [Youth] | 0:3 | ||||
| 26. Round | 11/05/2024 | 1. FC Slovácko [Youth] | - | FK Pardubice [Youth] | 3:0 | |
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| 27. Round | 18/05/2024 | FC Zlín [Youth] | - | 1. FC Slovácko [Youth] | 2:2 | ||||
| 28. Round | 25/05/2024 | 1. FC Slovácko [Youth] | - | Dynamo České Budějovice [Youth] | 3:6 | ||||
| 29. Round | 01/06/2024 | Vysočina Jihlava [Youth] | - | 1. FC Slovácko [Youth] | 2:1 | ||||
| 30. Round | 08/06/2024 | 1. FC Slovácko [Youth] | - | FK Dukla Praha [Youth] | 0:1 |
Czech Republic