| 2. Round | 11/03/2006 | JEF United Chiba | - | Ventforet Kofu | 2:2 | ||||
| 3. Round | 18/03/2006 | JEF United Chiba | - | Avispa Fukuoka | 2:2 |  |
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| 5. Round | 25/03/2006 | JEF United Chiba | - | Kashima Antlers | 0:1 | ||||
| 6. Round | 02/04/2006 | Kawasaki Frontale | - | JEF United Chiba | 2:2 | ||||
| 7. Round | 08/04/2006 | JEF United Chiba | - | Cerezo Osaka | 2:1 | ||||
| 10. Round | 29/04/2006 | Oita Trinita | - | JEF United Chiba | 0:3 | ||||
| 13. Round | 19/07/2006 | JEF United Chiba | - | Gamba Osaka | 1:2 | ||||
| 14. Round | 22/07/2006 | Sanfrecce Hiroshima | - | JEF United Chiba | 2:4 | ||||
| 19. Round | 23/08/2006 | Júbilo Iwata | - | JEF United Chiba | 3:1 | ||||
| 30. Round | 11/11/2006 | JEF United Chiba | - | Albirex Niigata | 1:3 | ||||
| 31. Round | 19/11/2006 | Gamba Osaka | - | JEF United Chiba | 1:0 | ||||
| 32. Round | 23/11/2006 | JEF United Chiba | - | Sanfrecce Hiroshima | 0:1 | ||||
| 33. Round | 26/11/2006 | Ventforet Kofu | - | JEF United Chiba | 2:3 |
Japan