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| 26/05/1999 | 16:30 | FK Nevėžis | - | Kauno Jegeriai | 2:1 | |
| 16:30 | Lokomotyvas Kaunas | - | FK Žalgiris B | 0:3 | ||
| 16:30 | Inkaras Kaunas | - | FK Kareda Siauliai | 1:3 | ||
| 16:30 | FK Ekranas | - | FK Zalgiris | 0:0 dec. | ||
| 16:30 | FK Dainava Alytus | - | FBK Kaunas | 0:1 | ||
| 16:30 | FK Atlantas | - | FK Banga Gargždai | 0:1 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Kareda Siauliai | 20 | 17 | 3 | 0 | 64:8 | 56 | 54 |
| 2 |
|
FBK Kaunas | 20 | 16 | 3 | 1 | 48:11 | 37 | 51 |
| 3 |
|
FK Zalgiris | 20 | 14 | 6 | 0 | 61:8 | 53 | 50 |
| 4 |
|
FK Ekranas | 20 | 10 | 5 | 5 | 39:18 | 21 | 34 |
| 5 |
|
Inkaras Kaunas | 20 | 8 | 4 | 8 | 28:25 | 3 | 28 |
| 6 |
|
FK Dainava Alytus | 20 | 8 | 1 | 11 | 22:43 | -21 | 25 |
| 7 |
|
FK Banga Gargždai | 20 | 6 | 5 | 9 | 16:25 | -9 | 23 |
| 8 |
|
FK Nevėžis | 20 | 6 | 4 | 10 | 16:31 | -15 | 22 |
| 9 |
|
FK Atlantas | 20 | 6 | 3 | 11 | 25:30 | -5 | 21 |
| 10 |
|
FK Žalgiris B | 20 | 6 | 2 | 12 | 21:51 | -30 | 20 |
| 11 |
|
Kauno Jegeriai | 20 | 5 | 2 | 13 | 18:44 | -26 | 17 |
| 12 |
|
Lokomotyvas Kaunas | 20 | 4 | 0 | 16 | 10:38 | -28 | 12 |
| 13 |
|
Mastis Telšiai | 12 | 1 | 0 | 11 | 4:40 | -36 | 3 |
| 14 |
|
FK Panerys | 0 | 0 | 0 | 0 | 0:0 | 0 | 0 |
