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| 02/10/1999 | 13:30 | Inkaras Kaunas | - | FK Dainava Alytus | 4:0 | |
| 03/10/1999 | 13:00 | FK Ekranas | - | FK Zalgiris | 0:0 | |
| 13:00 | FK Banga Gargždai | - | Ardena Vilnius | 0:0 dec. | ||
| 13:00 | FK Atlantas | - | FK Nevėžis | 3:1 | ||
| 13:00 | Zalgiris Kaunas | - | FK Kareda Siauliai | 2:2 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Zalgiris Kaunas | 13 | 9 | 3 | 1 | 24:8 | 16 | 30 |
| 2 |
|
FK Atlantas | 13 | 7 | 3 | 3 | 27:19 | 8 | 24 |
| 3 |
|
FK Zalgiris | 13 | 6 | 5 | 2 | 20:7 | 13 | 23 |
| 4 |
|
FK Kareda Siauliai | 13 | 7 | 2 | 4 | 24:13 | 11 | 23 |
| 5 |
|
FK Ekranas | 13 | 6 | 5 | 2 | 17:8 | 9 | 23 |
| 6 |
|
Inkaras Kaunas | 13 | 6 | 4 | 3 | 19:13 | 6 | 22 |
| 7 |
|
FK Nevėžis | 13 | 3 | 4 | 6 | 7:16 | -9 | 13 |
| 8 |
|
FK Banga Gargždai | 13 | 0 | 6 | 7 | 9:23 | -14 | 8 |
| 9 |
|
Ardena Vilnius | 13 | 1 | 4 | 8 | 5:18 | -13 | 6 |
| 10 |
|
FK Dainava Alytus | 13 | 1 | 2 | 10 | 6:33 | -27 | 5 |
