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| 14/10/2012 | 15:00 | FK Ural | - | FK Neftekhimik | 3:0 (2:0) | |
| 15/10/2012 | 09:00 | SKA-Energiya Khabarovsk | - | Baltika Kaliningrad | 1:0 (0:0) | |
| 12:00 | Torpedo Moskva | - | Sibir Novosibirsk | 1:1 (0:0) | ||
| 14:00 | Metallurg-Kuzbass Novokuznetsk | - | FK Ufa | 0:1 (0:0) | ||
| 14:00 | FC Petrotrest | - | Shinnik Yaroslavl | 3:1 (0:1) | ||
| 15:00 | Spartak Nalchik | - | FK Khimki | 1:0 (0:0) | ||
| 16:00 | FC Volgar-Gazprom | - | FK Tom Tomsk | 0:1 (0:0) | ||
| 16:00 | FC Salyut Belgorod | - | Rotor Volgograd | 1:0 (0:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Tom Tomsk | 15 | 10 | 3 | 2 | 30:18 | 12 | 33 |
| 2 |
|
FK Ural | 15 | 9 | 4 | 2 | 33:10 | 23 | 31 |
| 3 |
|
SKA-Energiya Khabarovsk | 15 | 8 | 5 | 2 | 19:10 | 9 | 29 |
| 4 |
|
Spartak Nalchik | 15 | 8 | 3 | 4 | 14:12 | 2 | 27 |
| 5 |
|
Baltika Kaliningrad | 15 | 6 | 5 | 4 | 16:15 | 1 | 23 |
| 6 |
|
FK Ufa | 15 | 7 | 2 | 6 | 16:17 | -1 | 23 |
| 7 |
|
FK Neftekhimik | 15 | 6 | 4 | 5 | 21:19 | 2 | 22 |
| 8 |
|
Sibir Novosibirsk | 15 | 6 | 4 | 5 | 18:17 | 1 | 22 |
| 9 |
|
Rotor Volgograd | 15 | 6 | 4 | 5 | 11:12 | -1 | 22 |
| 10 |
|
Enisey Krasnoyarsk | 15 | 5 | 5 | 5 | 15:15 | 0 | 20 |
| 11 |
|
FC Petrotrest | 15 | 5 | 3 | 7 | 16:20 | -4 | 18 |
| 12 |
|
FC Volgar-Gazprom | 15 | 3 | 7 | 5 | 11:16 | -5 | 16 |
| 13 |
|
Torpedo Moskva | 15 | 3 | 7 | 5 | 10:16 | -6 | 16 |
| 14 |
|
FC Salyut Belgorod | 15 | 3 | 5 | 7 | 10:16 | -6 | 14 |
| 15 |
|
Shinnik Yaroslavl | 15 | 3 | 4 | 8 | 10:18 | -8 | 13 |
| 16 |
|
Metallurg-Kuzbass Novokuznetsk | 16 | 3 | 3 | 10 | 8:16 | -8 | 12 |
| 17 |
|
FK Khimki | 15 | 1 | 4 | 10 | 9:20 | -11 | 7 |
| Promotion | |
| Playoffs | |
| Relegation |
