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| 1st(1st leg) | MFK Ružomberok | - | FC Artmedia Petržalka | 1:3 | ||
| 2nd (2nd leg) | FC Artmedia Petržalka | - | MFK Ružomberok | 1:1 | ||
| 1st(1st leg): 22/04/2009 15:00 | 2nd (2nd leg): 05/05/2009 15:00 | Winner: FC Artmedia Petržalka | ||||
| 1st(1st leg) | Slovan Bratislava | - | MFK Košice | 0:1 | ||
| 2nd (2nd leg) | MFK Košice | - | Slovan Bratislava | 1:1 | ||
| 1st(1st leg): 22/04/2009 18:00 | 2nd (2nd leg): 05/05/2009 16:15 | Winner: MFK Košice | ||||
