| 17. Round | 22/02/2009 | Sigma Olomouc | - | AC Sparta Praha | 0:1 | ||||
| 19. Round | 08/03/2009 | Sigma Olomouc | - | FK Mladá Boleslav | 2:2 | ||||
| 20. Round | 15/03/2009 | Sigma Olomouc | - | SK Kladno | 1:3 | ||||
| 22. Round | 05/04/2009 | Sigma Olomouc | - | Slavia Praha | 1:0 |  |
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| 23. Round | 12/04/2009 | Viktoria Žižkov | - | Sigma Olomouc | 1:2 | ||||
| 24. Round | 19/04/2009 | Sigma Olomouc | - | Dynamo České Budějovice | 1:1 | ||||
| 25. Round | 26/04/2009 | Slovan Liberec | - | Sigma Olomouc | 0:1 | ||||
| 26. Round | 03/05/2009 | Sigma Olomouc | - | FK Teplice | 2:1 | ||||
| 28. Round | 17/05/2009 | Sigma Olomouc | - | Tescoma Zlín | 1:1 |
Czech Republic