| 1. Round | 17/01/2009 | Jaguares Chiapas | - | Atlas Guadalajara | 2:1 | ||||
| 2. Round | 24/01/2009 | Cruz Azul | - | Atlas Guadalajara | 4:0 |  |
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| 3. Round | 01/02/2009 | Atlas Guadalajara | - | UANL Tigres | 1:1 | ||||
| 4. Round | 07/02/2009 | Club San Luis | - | Atlas Guadalajara | 2:1 | ||||
| 5. Round | 15/02/2009 | Atlas Guadalajara | - | Atlante | 1:0 | ||||
| 9. Round | 08/03/2009 | Atlas Guadalajara | - | Indios Juárez | 3:1 | ||||
| 10. Round | 15/03/2009 | Deportivo Guadalajara | - | Atlas Guadalajara | 0:1 |
Mexico