| 14. Round | 06/08/2006 | Zenit St. Petersburg | - | Shinnik Yaroslavl | 1:0 |  |
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| 15. Round | 12/08/2006 | FK Tom Tomsk | - | Zenit St. Petersburg | 2:2 | |
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| 16. Round | 20/08/2006 | FK Saturn | - | Zenit St. Petersburg | 0:0 | ||||
| 17. Round | 28/08/2006 | Zenit St. Petersburg | - | FK Amkar Perm | 2:0 | |
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| 18. Round | 10/09/2006 | FK Rostov | - | Zenit St. Petersburg | 1:3 | |
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| 19. Round | 17/09/2006 | Zenit St. Petersburg | - | Krylia Sovetov | 1:0 | ||||
| 21. Round | 01/10/2006 | Zenit St. Petersburg | - | Spartak Nalchik | 4:0 |  |
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| 22. Round | 14/10/2006 | Spartak Moskva | - | Zenit St. Petersburg | 1:0 | ||||
| 23. Round | 22/10/2006 | Zenit St. Petersburg | - | Lokomotiv Moskva | 4:1 | ||||
| 24. Round | 25/10/2006 | Rubin Kazan | - | Zenit St. Petersburg | 3:0 | ||||
| 25. Round | 29/10/2006 | Zenit St. Petersburg | - | FK Moskva | 1:1 | |
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| 26. Round | 05/11/2006 | CSKA Moskva | - | Zenit St. Petersburg | 1:0 | |
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| 27. Round | 08/11/2006 | Torpedo Moskva | - | Zenit St. Petersburg | 1:2 | ||||
| 29. Round | 18/11/2006 | Shinnik Yaroslavl | - | Zenit St. Petersburg | 1:2 | ||||
| 30. Round | 26/11/2006 | Zenit St. Petersburg | - | FK Tom Tomsk | 0:0 |
Turkey