| 1. Round | 18/08/2012 | Milton Keynes Dons | - | Oldham Athletic | 2:0 |  |
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| 2. Round | 21/08/2012 | AFC Bournemouth | - | Milton Keynes Dons | 1:1 | ||||
| 3. Round | 25/08/2012 | Swindon Town | - | Milton Keynes Dons | 1:0 | ||||
| 4. Round | 01/09/2012 | Milton Keynes Dons | - | Carlisle United | 2:0 | ||||
| 6. Round | 15/09/2012 | Milton Keynes Dons | - | Yeovil Town | 1:0 | ||||
| 7. Round | 18/09/2012 | Milton Keynes Dons | - | Notts County | 1:1 | ||||
| 26. Round | 01/01/2013 | Notts County | - | Milton Keynes Dons | 1:2 | ||||
| 32. Round | 09/02/2013 | Oldham Athletic | - | Milton Keynes Dons | 3:1 | ||||
| 23. Round | 12/02/2013 | Doncaster Rovers | - | Milton Keynes Dons | 0:0 | |
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| 34. Round | 23/02/2013 | Carlisle United | - | Milton Keynes Dons | 1:1 | ||||
| 35. Round | 26/02/2013 | Portsmouth FC | - | Milton Keynes Dons | 1:1 |
Scotland