| 1. Round | 27/07/2008 | Fortuna Düsseldorf | - | SC Paderborn 07 | 1:4 | ||||
| 2. Round | 02/08/2008 | Stuttgarter Kickers | - | Fortuna Düsseldorf | 0:2 |  |
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| 3. Round | 16/08/2008 | Wacker Burghausen | - | Fortuna Düsseldorf | 0:4 | |
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| 4. Round | 23/08/2008 | Fortuna Düsseldorf | - | SpVgg Unterhaching | 0:0 | ||||
| 5. Round | 31/08/2008 | SV Sandhausen | - | Fortuna Düsseldorf | 2:0 |  |
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| 6. Round | 13/09/2008 | Fortuna Düsseldorf | - | Jahn Regensburg | 3:1 | ||||
| 7. Round | 20/09/2008 | Erzgebirge Aue | - | Fortuna Düsseldorf | 0:1 | ||||
| 8. Round | 27/09/2008 | Fortuna Düsseldorf | - | Rot-Weiß Erfurt | 3:0 | ||||
| 17. Round | 29/11/2008 | FC Carl Zeiss Jena | - | Fortuna Düsseldorf | 1:0 |
Germany