| 14. Round | 18/11/2012 | Jahn Regensburg | - | 1. FC Union Berlin | 3:3 | ||||
| 15. Round | 23/11/2012 | Jahn Regensburg | - | VfR Aalen | 1:3 | ||||
| 16. Round | 27/11/2012 | 1. FC Kaiserslautern | - | Jahn Regensburg | 1:1 | ||||
| 17. Round | 30/11/2012 | Jahn Regensburg | - | Dynamo Dresden | 0:0 | ||||
| 18. Round | 09/12/2012 | Jahn Regensburg | - | TSV 1860 München | 1:1 |  |
|||
| 19. Round | 16/12/2012 | MSV Duisburg | - | Jahn Regensburg | 4:2 | ||||
| 20. Round | 03/02/2013 | Jahn Regensburg | - | Hertha BSC | 1:5 | ||||
| 23. Round | 24/02/2013 | Energie Cottbus | - | Jahn Regensburg | 1:1 | ||||
| 25. Round | 08/03/2013 | FC St. Pauli | - | Jahn Regensburg | 3:2 | ||||
| 26. Round | 17/03/2013 | Jahn Regensburg | - | Erzgebirge Aue | 1:1 | |
|||
| 27. Round | 31/03/2013 | 1. FC Köln | - | Jahn Regensburg | 2:1 | ||||
| 28. Round | 06/04/2013 | Jahn Regensburg | - | FSV Frankfurt | 1:4 | |
|||
| 33. Round | 12/05/2013 | Jahn Regensburg | - | 1. FC Kaiserslautern | 1:3 | ||||
| 34. Round | 19/05/2013 | Dynamo Dresden | - | Jahn Regensburg | 3:1 | |
Germany