| 18. Round | 08/03/2025 | Slovan Velvary | - | FC Chomutov | 1:0 |  |
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| 20. Round | 23/03/2025 | Bohemians Praha 1905 B | - | FC Chomutov | 1:1 | |
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| 21. Round | 29/03/2025 | FC Chomutov | - | SK Petřín Plzeň | 3:5 |  |
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| 22. Round | 06/04/2025 | FK MAS Táborsko B | - | FC Chomutov | 3:2 | ||||
| 23. Round | 11/04/2025 | FC Chomutov | - | FC Písek | 1:2 | |
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| 24. Round | 18/04/2025 | Sokol Hostouň | - | FC Chomutov | 0:0 | ||||
| 32. Round | 07/05/2025 | FC Chomutov | - | FK Příbram | 0:3 | ||||
| 27. Round | 10/05/2025 | FC Chomutov | - | FK Loko Vltavín | 2:1 | |
Czech Republic