| 3. Liga | Matches | W | D | L |  |
 |
 |
| home | 1 | - | - | 1 | 2 | - | - |
| away | 4 | - | 1 | 3 | 12 | - | - |
| overall | 5 | - | 1 | 4 | 14 | - | - |
| Aufstiegsrunde 3. Liga | Matches | W | D | L | |
|
|
| home | 1 | 1 | - | - | 3 | - | - |
| away | - | - | - | - | - | - | - |
| overall | 1 | 1 | - | - | 3 | - | - |
| Regionalliga Süd (1994-2012) | Matches | W | D | L | |
|
|
| home | 4 | 1 | 2 | 1 | 7 | - | - |
| away | 3 | - | 3 | - | 6 | 1 | - |
| overall | 7 | 1 | 5 | 1 | 13 | 1 | - |
| 3. Liga | Home | - | Guest | |
|
|
Results |
| 27/09/08 | SC Paderborn 07 | - | Bayern München II | 4 | - | - | 2:1 |
| 26/04/09 | Bayern München II | - | Erzgebirge Aue | 2 | - | - | 2:3 |
| 03/10/09 | Rot-Weiß Erfurt | - | Bayern München II | 4 | - | - | 2:0 |
| 20/03/10 | Jahn Regensburg | - | Bayern München II | 2 | - | - | 1:1 |
| 24/04/10 | Eintracht Braunschweig | - | Bayern München II | 2 | - | - | 3:1 |
| Aufstiegsrunde 3. Liga | Home | - | Guest | |
|
|
Results |
| 01/06/14 | Bayern München II | - | Fortuna Köln | 3 | - | - | 2:1 |
| Regionalliga Süd (1994-2012) | Home | - | Guest | |
|
|
Results |
| 10/10/04 | Bayern München II | - | FC Nöttingen | 1 | - | - | 2:2 |
| 15/05/05 | 1. FSV Mainz 05 II | - | Bayern München II | 2 | - | - | 1:1 |
| 20/11/05 | Bayern München II | - | 1. FC Kaiserslautern II | 3 | - | - | 3:2 |
| 25/02/07 | Bayern München II | - | 1. FC Saarbrücken | 2 | - | - | 0:0 |
| 28/10/07 | Karlsruher SC II | - | Bayern München II | 2 | 1 | - | 0:0 |
| 07/03/08 | Bayern München II | - | SpVgg Unterhaching | 1 | - | - | 2:4 |
| 21/04/12 | Wormatia Worms | - | Bayern München II | 2 | - | - | 0:0 |
Germany