| Primera División | Matches | W | D | L |  |
 |
 |
| home | 5 | 1 | 2 | 2 | 9 | - | 1 |
| away | 6 | 2 | - | 4 | 15 | - | 1 |
| overall | 11 | 3 | 2 | 6 | 24 | - | 2 |
| Segunda División | Matches | W | D | L | |
|
|
| home | - | - | - | - | - | - | - |
| away | 1 | 1 | - | - | 3 | - | 1 |
| overall | 1 | 1 | - | - | 3 | - | 1 |
| Primera División | Home | - | Guest | |
|
|
Results |
| 08/03/17 | Juan Aurich | - | Cusco FC | 3 | - | - | 3:1 |
| 23/04/17 | Sport Huancayo | - | Cusco FC | 3 | - | 1 | 0:3 dec. |
| 11/04/18 | Cusco FC | - | Academia Cantolao | 2 | - | - | 1:0 |
| 28/04/18 | Deportivo Binacional | - | Cusco FC | 3 | - | - | 3:1 |
| 22/03/19 | Cusco FC | - | Deportivo Binacional | 1 | - | 1 | 0:1 |
| 06/05/19 | Cusco FC | - | Academia Cantolao | 3 | - | - | 2:2 |
| 17/02/20 | Universidad Técnica | - | Cusco FC | 2 | - | - | 2:1 |
| 06/11/20 | Cusco FC | - | Sport Huancayo | 1 | - | - | 0:0 |
| 01/08/21 | Cusco FC | - | Alianza Universidad | 2 | - | - | 2:3 |
| 22/09/21 | Sport Boys | - | Cusco FC | - | - | - | 3:2 |
| 17/09/24 | AD Tarma | - | Cusco FC | 4 | - | - | 1:2 |
| Segunda División | Home | - | Guest | |
|
|
Results |
| 05/06/22 | Unión Huaral | - | Cusco FC | 3 | - | 1 | 0:1 |
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