| Meistriliiga | Matches | W | D | L |  |
 |
 |
| home | 9 | 8 | 1 | - | 10 | 1 | - |
| away | 5 | 4 | - | 1 | 8 | 1 | - |
| overall | 14 | 12 | 1 | 1 | 18 | 2 | - |
| Superkarikas | Matches | W | D | L | |
|
|
| home | 1 | 1 | - | - | 1 | - | - |
| away | - | - | - | - | - | - | - |
| overall | 1 | 1 | - | - | 1 | - | - |
| Meistriliiga | Home | - | Guest | |
|
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Results |
| 21/10/20 | JK Narva Trans | - | FC Flora | - | - | - | 1:2 |
| 21/06/21 | JK Tammeka | - | FC Flora | 1 | - | - | 0:3 |
| 09/04/22 | FC Flora | - | Tallinna JK Legion | 2 | - | - | 2:0 |
| 19/06/22 | FC Flora | - | JK Nõmme Kalju | 2 | - | - | 2:0 |
| 20/08/22 | FC Flora | - | Pärnu JK Vaprus | - | - | - | 3:1 |
| 31/08/22 | FC Flora | - | JK Nõmme Kalju | - | - | - | 2:0 |
| 30/10/22 | FC Flora | - | Paide Linnameeskond | - | - | - | 1:0 |
| 03/03/23 | FC Flora | - | Harju JK | 1 | - | - | 4:0 |
| 07/06/23 | FC Flora | - | Paide Linnameeskond | 1 | 1 | - | 0:0 |
| 22/09/23 | FC Flora | - | JK Tallinna Kalev | 2 | - | - | 1:0 |
| 14/04/24 | Pärnu JK Vaprus | - | FC Flora | 2 | - | - | 1:3 |
| 05/05/24 | FC Flora | - | FCI Levadia | 2 | - | - | 1:0 |
| 25/09/24 | JK Nõmme Kalju | - | FC Flora | 1 | 1 | - | 3:0 |
| 05/04/25 | JK Nõmme Kalju | - | FC Flora | 4 | - | - | 1:2 |
| Superkarikas | Home | - | Guest | |
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Results |
| 05/03/21 | FC Flora | - | Paide Linnameeskond | 1 | - | - | 1:0 |
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