| Premier Liga | Matches | W | D | L |  |
 |
 |
| home | 2 | - | 2 | - | 2 | - | - |
| away | 5 | 1 | 1 | 3 | 9 | - | 1 |
| overall | 7 | 1 | 3 | 3 | 11 | - | 1 |
| 1. Division | Matches | W | D | L | |
|
|
| home | 1 | - | 1 | - | 2 | - | - |
| away | - | - | - | - | - | - | - |
| overall | 1 | - | 1 | - | 2 | - | - |
| Relegation Premier Liga | Matches | W | D | L | |
|
|
| home | 2 | 2 | - | - | 4 | - | - |
| away | - | - | - | - | - | - | - |
| overall | 2 | 2 | - | - | 4 | - | - |
| Premier Liga | Home | - | Guest | |
|
|
Results |
| 20/11/10 | Sibir Novosibirsk | - | FK Tom Tomsk | 1 | - | 1 | 0:1 |
| 22/06/11 | FK Tom Tomsk | - | FK Rostov | - | - | - | 1:1 |
| 20/08/11 | CSKA Moskva | - | FK Tom Tomsk | 2 | - | - | 3:0 |
| 04/04/14 | Kuban Krasnodar (1928-2018) | - | FK Tom Tomsk | 1 | - | - | 2:0 |
| 26/04/14 | FK Ural | - | FK Tom Tomsk | 1 | - | - | 0:0 |
| 01/10/16 | FK Tom Tomsk | - | FK Ural | 2 | - | - | 1:1 |
| 30/10/16 | Zenit St. Petersburg | - | FK Tom Tomsk | 4 | - | - | 1:0 |
| 1. Division | Home | - | Guest | |
|
|
Results |
| 24/03/18 | FK Tom Tomsk | - | Sibir Novosibirsk | 2 | - | - | 1:1 |
| Relegation Premier Liga | Home | - | Guest | |
|
|
Results |
| 27/05/16 | FK Tom Tomsk | - | Kuban Krasnodar (1928-2018) | 4 | - | - | 2:0 |
| 02/06/19 | FK Tom Tomsk | - | FK Ufa | - | - | - | 1:0 |
Russia