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| 01/09/2012 | 16:00 | FC Graffin Vlašim | - | FK Baník Sokolov | 1:1 (1:1) | |
| 16:00 | FK MAS Táborsko | - | 1. HFK Olomouc | 2:0 (0:0) | ||
| 17:00 | SFC Opava | - | FK Pardubice | 1:5 (0:3) | ||
| 02/09/2012 | 09:15 | Viktoria Žižkov | - | FK Baník Most | 0:0 (0:0) | |
| 16:00 | Bohemians 1905 | - | MFK Karviná | 5:1 (3:1) | ||
| 16:00 | 1. SC Znojmo | - | FC Fastav Zlín | 2:0 (0:0) | ||
| 16:00 | FK Varnsdorf | - | Bohemians Praha | 0:0 (0:0) | ||
| 16:00 | FK Čáslav | - | FK Ústí nad Labem | 1:2 (0:2) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Viktoria Žižkov | 5 | 4 | 1 | 0 | 9:0 | 9 | 13 |
| 2 |
|
1. SC Znojmo | 5 | 4 | 1 | 0 | 8:3 | 5 | 13 |
| 3 |
|
Bohemians 1905 | 5 | 3 | 1 | 1 | 9:3 | 6 | 10 |
| 4 |
|
FK Varnsdorf | 5 | 2 | 2 | 1 | 7:3 | 4 | 8 |
| 5 |
|
FK MAS Táborsko | 5 | 2 | 2 | 1 | 7:4 | 3 | 8 |
| 6 |
|
FK Pardubice | 5 | 2 | 1 | 2 | 11:7 | 4 | 7 |
| 7 |
|
1. HFK Olomouc | 5 | 2 | 1 | 2 | 9:8 | 1 | 7 |
| 8 |
|
FK Baník Most | 5 | 1 | 3 | 1 | 4:7 | -3 | 6 |
| 9 |
|
FC Fastav Zlín | 5 | 2 | 0 | 3 | 3:8 | -5 | 6 |
| 10 |
|
FK Čáslav | 5 | 1 | 2 | 2 | 4:3 | 1 | 5 |
| 11 |
|
Bohemians Praha | 5 | 0 | 5 | 0 | 3:3 | 0 | 5 |
| 12 |
|
FC Graffin Vlašim | 5 | 1 | 2 | 2 | 7:9 | -2 | 5 |
| 13 |
|
FK Baník Sokolov | 5 | 1 | 2 | 2 | 4:7 | -3 | 5 |
| 14 |
|
MFK Karviná | 5 | 1 | 1 | 3 | 4:9 | -5 | 4 |
| 15 |
|
FK Ústí nad Labem | 5 | 1 | 0 | 4 | 4:9 | -5 | 3 |
| 16 |
|
SFC Opava | 5 | 0 | 2 | 3 | 4:14 | -10 | 2 |
| Promotion | |
| Relegation |
