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| 04/09/2013 | 16:00 | Jõhvi FC Lokomotiv | - | Pärnu Linnameeskond | 5:4 pso | |
| 11/09/2013 | 16:00 | Kiviõli FC Irbis | - | Tartu FC Santos | 0:11 | |
| 17:30 | JK Welco Elekter | - | Puuma Tallinn | 3:4 | ||
| 25/09/2013 | 18:30 | HÜJK Emmaste | - | Tartu SK 10 Premium | 1:0 | |
| 05/10/2013 | 15:00 | FC Kuressaare | - | Paide Linnameeskond | 1:0 | |
| 16/10/2013 | 17:30 | JK Tammeka II | - | Saue JK Laagri | 6:0 | |
| 17:30 | FC Tartu | - | FC Infonet | 1:6 | ||
| 12/11/2013 | 16:00 | FC Levadia | - | FC Flora | 2:0 |
