| 4. Round | 31/08/2019 | FC Annecy | - | Nîmes Olympique B | 1:0 |  |
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| 5. Round | 07/09/2019 | AS Monaco B | - | FC Annecy | 0:1 | ||||
| 6. Round | 14/09/2019 | FC Annecy | - | US Endoume | 3:1 | ||||
| 7. Round | 21/09/2019 | Jura Sud | - | FC Annecy | 0:0 | ||||
| 8. Round | 05/10/2019 | FC Annecy | - | Moulins Yzeure Foot | 0:0 | ||||
| 9. Round | 19/10/2019 | Monts d'Or Anse Foot | - | FC Annecy | 1:2 | ||||
| 10. Round | 02/11/2019 | FC Annecy | - | Étoile FC | 1:0 | ||||
| 11. Round | 09/11/2019 | FC Martigues | - | FC Annecy | 0:0 | ||||
| 12. Round | 23/11/2019 | FC Annecy | - | RC Grasse | 0:1 | |
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| 13. Round | 30/11/2019 | AS Saint-Priest | - | FC Annecy | 1:1 | ||||
| 15. Round | 21/12/2019 | Olympique Lyonnais B | - | FC Annecy | 1:2 | ||||
| 16. Round | 11/01/2020 | FC Annecy | - | Hyères FC | 3:0 | ||||
| 14. Round | 18/01/2020 | FC Annecy | - | Louhans-Cuiseaux | 2:1 | ||||
| 17. Round | 25/01/2020 | Marignane Gignac FC | - | FC Annecy | 0:1 | ||||
| 18. Round | 08/02/2020 | Nîmes Olympique B | - | FC Annecy | 0:1 | |
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| 19. Round | 15/02/2020 | FC Annecy | - | AS Monaco B | 2:3 | ||||
| 20. Round | 22/02/2020 | US Endoume | - | FC Annecy | 3:3 |  |
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| 21. Round | 07/03/2020 | FC Annecy | - | Jura Sud | 3:0 |
France