1. Round 19/09/1999 Panathinaikos - AO Trikala 2:0
2. Round 25/09/1999 AEK Athen - Panathinaikos 1:2
3. Round 02/10/1999 Panathinaikos - PAOK Saloniki 1:1 yellow card
4. Round 16/10/1999 Panathinaikos - Kalamata 5:0
5. Round 24/10/1999 Ethnikos Asteras - Panathinaikos 1:2
6. Round 30/10/1999 Panathinaikos - Iraklis Saloniki 3:0
7. Round 07/11/1999 Paniliakos Pyrgos - Panathinaikos 0:1 yellow card
8. Round 20/11/1999 Panathinaikos - Olympiakos Piraeus 2:0
9. Round 28/11/1999 Ionikos Nikea - Panathinaikos 2:2 yellow-red card
12. Round 22/12/1999 Skoda Xanthi - Panathinaikos 1:3
13. Round 28/12/1999 Panathinaikos - Panachaiki GE 7:1
14. Round 07/01/2000 AO Proodeftiki - Panathinaikos 1:0
15. Round 16/01/2000 Panathinaikos - Panionios GSS 2:1
16. Round 21/01/2000 Apollon Smyrnis - Panathinaikos 0:3
17. Round 29/01/2000 Panathinaikos - AO Kavala 3:0
18. Round 05/02/2000 AO Trikala - Panathinaikos 1:3
19. Round 12/02/2000 Panathinaikos - AEK Athen 1:0
20. Round 19/02/2000 PAOK Saloniki - Panathinaikos 1:3 Goal yellow-red card
22. Round 04/03/2000 Panathinaikos - Ethnikos Asteras 4:0 Goal
23. Round 11/03/2000 Iraklis Saloniki - Panathinaikos 1:3 Goal
24. Round 18/03/2000 Panathinaikos - Paniliakos Pyrgos 3:1
25. Round 25/03/2000 Olympiakos Piraeus - Panathinaikos 2:2
26. Round 01/04/2000 Panathinaikos - Ionikos Nikea 5:0
27. Round 11/04/2000 Aris Saloniki - Panathinaikos 0:2 yellow card
28. Round 16/04/2000 Panathinaikos - OFI Heraklion 3:2
29. Round 21/04/2000 Panathinaikos - Skoda Xanthi 2:1 Goal
30. Round 02/05/2000 Panachaiki GE - Panathinaikos 1:0 yellow card
33. Round 20/05/2000 Panathinaikos - Apollon Smyrnis 5:0
34. Round 27/05/2000 AO Kavala - Panathinaikos 1:4