| 1. Round | 25/09/2003 | Girondins Bordeaux | - | FK Artmedia Petržalka | 2:1 | ||||
| 2. Round | 06/11/2003 | Girondins Bordeaux | - | Heart of Midlothian | 0:1 | ||||
| 3. Round | 26/02/2004 | Groclin Dyskobolia | - | Girondins Bordeaux | 0:1 | ||||
| 3. Round | 03/03/2004 | Girondins Bordeaux | - | Groclin Dyskobolia | 4:1 | ||||
| Round of 16 | 11/03/2004 | Girondins Bordeaux | - | Club Brugge KV | 3:1 | ||||
| Round of 16 | 25/03/2004 | Club Brugge KV | - | Girondins Bordeaux | 0:1 | ||||
| Quarter-finals | 08/04/2004 | Girondins Bordeaux | - | Valencia CF | 1:2 |  |
France