| 1. Round | 17/07/2016 | FO ŽP Šport Podbrezová | - | Spartak Trnava | 1:1 | ||||
| 2. Round | 24/07/2016 | Spartak Trnava | - | FC DAC 1904 | 2:1 | ||||
| 3. Round | 31/07/2016 | MFK Ružomberok | - | Spartak Trnava | 1:1 | ||||
| 9. Round | 17/09/2016 | Spartak Trnava | - | MFK Zemplín Michalovce | 2:3 | ||||
| 11. Round | 01/10/2016 | Spartak Trnava | - | Zlaté Moravce | 1:0 | ||||
| 12. Round | 15/10/2016 | Spartak Trnava | - | FO ŽP Šport Podbrezová | 0:2 | ||||
| 13. Round | 23/10/2016 | Spartak Trnava | - | FC DAC 1904 | 1:0 | ||||
| 14. Round | 29/10/2016 | Spartak Trnava | - | MFK Ružomberok | 0:1 |
France