| 22. Round | 27/01/2024 | FC Annecy | - | Pau FC | 0:0 | ||||
| 23. Round | 03/02/2024 | EA Guingamp | - | FC Annecy | 1:4 |  |
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| 24. Round | 10/02/2024 | FC Annecy | - | US Concarneau | 0:3 |  |
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| 26. Round | 24/02/2024 | AS Saint-Étienne | - | FC Annecy | 2:1 | ||||
| 27. Round | 02/03/2024 | FC Annecy | - | US Quevilly-Rouen | 0:0 | ||||
| 28. Round | 09/03/2024 | AC Ajaccio | - | FC Annecy | 1:3 | ||||
| 29. Round | 16/03/2024 | FC Annecy | - | Girondins Bordeaux | 3:1 | |
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| 30. Round | 30/03/2024 | USL Dunkerque | - | FC Annecy | 0:2 | |
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| 31. Round | 06/04/2024 | FC Annecy | - | Valenciennes FC | 2:1 | ||||
| 32. Round | 13/04/2024 | Stade Lavallois | - | FC Annecy | 0:3 | |
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| 33. Round | 20/04/2024 | FC Annecy | - | Grenoble Foot 38 | 0:1 | ||||
| 34. Round | 23/04/2024 | SM Caen | - | FC Annecy | 2:1 | ||||
| 35. Round | 27/04/2024 | FC Annecy | - | SC Bastia | 3:2 | |
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| 36. Round | 03/05/2024 | Rodez AF | - | FC Annecy | 1:3 | |
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| 38. Round | 17/05/2024 | ESTAC Troyes | - | FC Annecy | 1:1 | |
Guinea