| 3. Round | 04/09/2016 | CD Guijuelo | - | Burgos CF | 1:1 |  |
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| 5. Round | 18/09/2016 | Racing Santander | - | Burgos CF | 2:0 | ||||
| 6. Round | 25/09/2016 | Burgos CF | - | CD Palencia | 0:1 | ||||
| 7. Round | 02/10/2016 | RC Celta B | - | Burgos CF | 4:1 |  |
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| 14. Round | 13/11/2016 | CD Tudelano | - | Burgos CF | 0:2 |
Spain