| 3. Round | 10/09/2023 | FC Villefranche Beaujolais [Youth B] | - | FC Bourg-Péronnas [Youth B] | 0:1 | ||||
| 4. Round | 17/09/2023 | FC Bourg-Péronnas [Youth B] | - | FC Sochaux [Youth B] | 1:3 | ||||
| 17. Round | 28/01/2024 | FC Bourg-Péronnas [Youth B] | - | RC Strasbourg [Youth B] | 2:3 | ||||
| 18. Round | 11/02/2024 | FC Metz [Youth B] | - | FC Bourg-Péronnas [Youth B] | 7:1 | ||||
| 23. Round | 07/04/2024 | FC Bourg-Péronnas [Youth B] | - | Racing Besançon [Youth B] | 3:2 |  |
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| 24. Round | 14/04/2024 | ESTAC Troyes [Youth B] | - | FC Bourg-Péronnas [Youth B] | 3:0 | ||||
| 26. Round | 12/05/2024 | Dijon FCO [Youth B] | - | FC Bourg-Péronnas [Youth B] | 3:2 |
France