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| 09/03/2013 | 13:30 | FC Graffin Vlašim | - | FK Baník Most | 2:1 (1:1) | |
| 13:30 | FK MAS Táborsko | - | FK Baník Sokolov | 0:1 (0:0) | ||
| 17:00 | SFC Opava | - | 1. HFK Olomouc | 0:1 (0:1) | ||
| 10/03/2013 | 09:15 | Viktoria Žižkov | - | FK Ústí nad Labem | 0:0 (0:0) | |
| 13:30 | 1. SC Znojmo | - | MFK Karviná | 3:0 (2:0) | ||
| 16:00 | Bohemians 1905 | - | FC Fastav Zlín | 2:1 (1:0) | ||
| 17/04/2013 | 16:00 | FK Čáslav | - | Bohemians Praha | 0:0 (0:0) | |
| 16:00 | FK Varnsdorf | - | FK Pardubice | 2:0 (0:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Bohemians 1905 | 18 | 10 | 5 | 3 | 31:15 | 16 | 35 |
| 2 |
|
1. SC Znojmo | 18 | 10 | 4 | 4 | 25:16 | 9 | 34 |
| 3 |
|
1. HFK Olomouc | 18 | 10 | 3 | 5 | 28:21 | 7 | 33 |
| 4 |
|
FK Varnsdorf | 18 | 10 | 2 | 6 | 33:21 | 12 | 32 |
| 5 |
|
Viktoria Žižkov | 18 | 9 | 5 | 4 | 25:14 | 11 | 32 |
| 6 |
|
FK Pardubice | 18 | 8 | 3 | 7 | 29:20 | 9 | 27 |
| 7 |
|
FC Fastav Zlín | 18 | 8 | 3 | 7 | 26:21 | 5 | 27 |
| 8 |
|
FK Baník Sokolov | 18 | 7 | 6 | 5 | 22:18 | 4 | 27 |
| 9 |
|
FK Ústí nad Labem | 18 | 6 | 5 | 7 | 18:27 | -9 | 23 |
| 10 |
|
Bohemians Praha | 18 | 3 | 11 | 4 | 16:17 | -1 | 20 |
| 11 |
|
FK MAS Táborsko | 18 | 4 | 7 | 7 | 16:22 | -6 | 19 |
| 12 |
|
MFK Karviná | 18 | 4 | 7 | 7 | 18:27 | -9 | 19 |
| 13 |
|
FC Graffin Vlašim | 18 | 5 | 4 | 9 | 21:32 | -11 | 19 |
| 14 |
|
FK Čáslav | 18 | 3 | 7 | 8 | 11:19 | -8 | 16 |
| 15 |
|
FK Baník Most | 18 | 3 | 6 | 9 | 19:33 | -14 | 15 |
| 16 |
|
SFC Opava | 18 | 2 | 6 | 10 | 16:31 | -15 | 12 |
| Promotion | |
| Relegation |
