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| 23/03/2013 | 09:15 | FK Ústí nad Labem | - | FK Baník Most | 2:0 (2:0) | |
| 14:00 | FC Graffin Vlašim | - | MFK Karviná | 4:1 (3:0) | ||
| 14:00 | FK MAS Táborsko | - | Bohemians Praha | 1:1 (0:0) | ||
| 17:00 | SFC Opava | - | FC Fastav Zlín | 2:1 (2:0) | ||
| 24/03/2013 | 09:15 | Viktoria Žižkov | - | FK Pardubice | 0:2 (0:0) | |
| 14:00 | 1. SC Znojmo | - | Bohemians 1905 | 2:0 (1:0) | ||
| 24/04/2013 | 16:00 | FK Varnsdorf | - | 1. HFK Olomouc | 3:0 (1:0) | |
| 16:00 | FK Čáslav | - | FK Baník Sokolov | 0:2 (0:1) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. SC Znojmo | 20 | 11 | 4 | 5 | 28:19 | 9 | 37 |
| 2 |
|
FK Varnsdorf | 20 | 11 | 3 | 6 | 36:21 | 15 | 36 |
| 3 |
|
Bohemians 1905 | 20 | 10 | 6 | 4 | 31:17 | 14 | 36 |
| 4 |
|
1. HFK Olomouc | 20 | 11 | 3 | 6 | 30:24 | 6 | 36 |
| 5 |
|
FK Baník Sokolov | 20 | 9 | 6 | 5 | 26:18 | 8 | 33 |
| 6 |
|
Viktoria Žižkov | 20 | 9 | 5 | 6 | 25:18 | 7 | 32 |
| 7 |
|
FK Pardubice | 20 | 9 | 3 | 8 | 32:22 | 10 | 30 |
| 8 |
|
FC Fastav Zlín | 20 | 9 | 3 | 8 | 30:24 | 6 | 30 |
| 9 |
|
FK Ústí nad Labem | 20 | 8 | 5 | 7 | 22:28 | -6 | 29 |
| 10 |
|
Bohemians Praha | 20 | 3 | 13 | 4 | 17:18 | -1 | 22 |
| 11 |
|
FC Graffin Vlašim | 20 | 6 | 4 | 10 | 25:35 | -10 | 22 |
| 12 |
|
FK MAS Táborsko | 20 | 4 | 8 | 8 | 17:25 | -8 | 20 |
| 13 |
|
MFK Karviná | 20 | 4 | 8 | 8 | 19:31 | -12 | 20 |
| 14 |
|
SFC Opava | 20 | 4 | 6 | 10 | 20:33 | -13 | 18 |
| 15 |
|
FK Baník Most | 20 | 4 | 6 | 10 | 21:35 | -14 | 18 |
| 16 |
|
FK Čáslav | 20 | 3 | 7 | 10 | 12:23 | -11 | 16 |
| Promotion | |
| Relegation |
