| Europa League | M. | W | D | L | goals | |||
| at home | 1 | 0 | 1 | 0 | 0 | : | 0 | |
| Away | 1 | 0 | 0 | 1 | 0 | : | 1 | |
| ∑ | 2 | 0 | 1 | 1 | 0 | : | 1 | |
| Europa League Qual. | M. | W | D | L | goals | |||
| at home | 1 | 0 | 0 | 1 | 2 | : | 3 | |
| Away | 1 | 0 | 0 | 1 | 0 | : | 1 | |
| ∑ | 2 | 0 | 0 | 2 | 2 | : | 4 | |
| overall | M. | W | D | L | goals | |||
| at home | 2 | 0 | 1 | 1 | 2 | : | 3 | |
| Away | 2 | 0 | 0 | 2 | 0 | : | 2 | |
| Neutral Place | 0 | 0 | 0 | 0 | 0 | : | 0 | |
| ∑ | 4 | 0 | 1 | 3 | 2 | : | 5 | |
| Europa League | |||||
| 1968/1969 | 2. Round | Athletic Bilbao | - | Panathinaikos | 1:0 (1:0) |
| 1968/1969 | 2. Round | Panathinaikos | - | Athletic Bilbao | 0:0 (0:0) |
| Europa League Qual. | |||||
| 2017/2018 | Play-offs | Athletic Bilbao | - | Panathinaikos | 1:0 (1:0) |
| 2017/2018 | Play-offs | Panathinaikos | - | Athletic Bilbao | 2:3 (1:0) |
|
For games that were decided on penalties the score after 120 minutes will be included in the ranking |
Greece 
![Panathinaikos [Women]](https://s.hs-data.com/bilder/wappen/mini/48626.gif?fallback=png "Panathinaikos [Women]"){kind=small}
![Panathinaikos [Youth]](https://s.hs-data.com/bilder/wappen/mini/17260.gif?fallback=png "Panathinaikos [Youth]"){kind=small}
![Panathinaikos [Youth B]](https://s.hs-data.com/bilder/wappen/mini/22892.gif?fallback=png "Panathinaikos [Youth B]"){kind=small}
