| Premier Liga | Matches | W | D | L |  |
 |
 |
| home | 1 | - | - | 1 | 4 | - | - |
| away | 5 | 2 | 1 | 2 | 12 | 2 | - |
| overall | 6 | 2 | 1 | 3 | 16 | 2 | - |
| 1. Division | Matches | W | D | L | |
|
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| home | 2 | 1 | - | 1 | 3 | - | - |
| away | 7 | 4 | 1 | 2 | 19 | 2 | - |
| overall | 9 | 5 | 1 | 3 | 22 | 2 | - |
| Premier Liga | Home | - | Guest | |
|
|
Results |
| 07/11/09 | FK Khimki | - | FK Tom Tomsk | - | - | - | 1:3 |
| 27/03/10 | Krylia Sovetov | - | FK Tom Tomsk | 2 | 1 | - | 2:3 |
| 03/05/12 | Krylia Sovetov | - | FK Tom Tomsk | 5 | 1 | - | 1:0 |
| 10/09/16 | FK Amkar Perm | - | FK Tom Tomsk | 1 | - | - | 1:0 |
| 21/11/16 | Akhmat Grozny | - | FK Tom Tomsk | 4 | - | - | 0:0 |
| 21/05/17 | FK Tom Tomsk | - | FK Krasnodar | 4 | - | - | 1:5 |
| 1. Division | Home | - | Guest | |
|
|
Results |
| 20/07/15 | FK Tom Tomsk | - | FK Radian-Baikal Irkutsk | 1 | - | - | 2:1 |
| 25/11/15 | Arsenal Tula | - | FK Tom Tomsk | 4 | 1 | - | 1:2 |
| 11/04/16 | FK Tom Tomsk | - | Luch Vladivostok | 2 | - | - | 0:2 |
| 14/11/18 | Zenit St. Petersburg 2 | - | FK Tom Tomsk | - | - | - | 0:1 |
| 07/07/19 | FK Nizhny Novgorod | - | FK Tom Tomsk | 2 | - | - | 0:2 |
| 25/08/19 | FK Chertanovo | - | FK Tom Tomsk | 3 | - | - | 1:1 |
| 29/11/20 | Dinamo Bryansk | - | FK Tom Tomsk | 2 | 1 | - | 1:0 |
| 11/04/21 | Baltika Kaliningrad | - | FK Tom Tomsk | 2 | - | - | 0:1 |
| 31/07/21 | Veles Moskva | - | FK Tom Tomsk | 6 | - | - | 1:0 |
Russia