| 26. Round | 11/01/2014 | AFC Wimbledon | - | Torquay United | 0:2 | ||||
| 27. Round | 18/01/2014 | Scunthorpe United | - | AFC Wimbledon | 0:0 | ||||
| 29. Round | 28/01/2014 | AFC Wimbledon | - | Hartlepool United | 2:1 | ||||
| 30. Round | 01/02/2014 | Oxford United | - | AFC Wimbledon | 2:1 | ||||
| 31. Round | 08/02/2014 | AFC Wimbledon | - | Rochdale AFC | 0:3 | ||||
| 32. Round | 15/02/2014 | Portsmouth FC | - | AFC Wimbledon | 1:0 | ||||
| 33. Round | 22/02/2014 | AFC Wimbledon | - | Bury FC | 0:1 | ||||
| 34. Round | 01/03/2014 | Fleetwood Town | - | AFC Wimbledon | 0:0 | ||||
| 35. Round | 08/03/2014 | AFC Wimbledon | - | York City | 0:1 | ||||
| 36. Round | 11/03/2014 | AFC Wimbledon | - | Chesterfield FC | 1:1 |  |
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| 39. Round | 25/03/2014 | Northampton Town | - | AFC Wimbledon | 2:2 | |
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| 40. Round | 29/03/2014 | Mansfield Town | - | AFC Wimbledon | 1:0 | |
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| 41. Round | 05/04/2014 | AFC Wimbledon | - | Bristol Rovers | 0:0 | ||||
| 42. Round | 12/04/2014 | Southend United | - | AFC Wimbledon | 0:1 | ||||
| 43. Round | 18/04/2014 | AFC Wimbledon | - | Newport County | 2:2 | ||||
| 44. Round | 21/04/2014 | Plymouth Argyle | - | AFC Wimbledon | 1:2 | ||||
| 46. Round | 03/05/2014 | Accrington Stanley | - | AFC Wimbledon | 3:2 |
Wales