| 4. Round | 01/09/2012 | Gillingham FC | - | Chesterfield FC | 1:1 | ||||
| 16. Round | 06/11/2012 | Gillingham FC | - | Cheltenham Town | 0:0 | ||||
| 17. Round | 10/11/2012 | Plymouth Argyle | - | Gillingham FC | 2:2 | ||||
| 24. Round | 26/12/2012 | Gillingham FC | - | Barnet FC | 0:1 | ||||
| 26. Round | 01/01/2013 | Southend United | - | Gillingham FC | 0:1 | ||||
| 27. Round | 05/01/2013 | Bristol Rovers | - | Gillingham FC | 0:2 | ||||
| 28. Round | 12/01/2013 | Gillingham FC | - | Port Vale FC | 1:2 | ||||
| 30. Round | 26/01/2013 | Gillingham FC | - | York City | 1:1 | ||||
| 23. Round | 12/02/2013 | York City | - | Gillingham FC | 0:0 | ||||
| 35. Round | 26/02/2013 | Gillingham FC | - | Oxford United | 0:1 | ||||
| 41. Round | 30/03/2013 | Fleetwood Town | - | Gillingham FC | 2:2 | ||||
| 43. Round | 06/04/2013 | Gillingham FC | - | Torquay United | 1:0 | ||||
| 44. Round | 13/04/2013 | Cheltenham Town | - | Gillingham FC | 1:0 | ||||
| 45. Round | 20/04/2013 | Gillingham FC | - | AFC Wimbledon | 2:2 | ||||
| 46. Round | 27/04/2013 | Burton Albion | - | Gillingham FC | 3:2 |
England
Wales