| 1. Round | 02/11/2012 | Cambridge City | - | Milton Keynes Dons | 0:0 | ||||
| 1. Round | 13/11/2012 | Milton Keynes Dons | - | Cambridge City | 6:1 |  |
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| 3. Round | 05/01/2013 | Sheffield Wednesday | - | Milton Keynes Dons | 0:0 | ||||
| 3. Round | 15/01/2013 | Milton Keynes Dons | - | Sheffield Wednesday | 2:0 | ||||
| 4. Round | 26/01/2013 | Queens Park Rangers | - | Milton Keynes Dons | 2:4 | ||||
| Round of 16 | 16/02/2013 | Milton Keynes Dons | - | Barnsley FC | 1:3 |
England
