| 6. Round | 03/09/2016 | Mansfield Town | - | Cambridge United | 0:0 | ||||
| 7. Round | 10/09/2016 | Plymouth Argyle | - | Cambridge United | 2:1 | ||||
| 8. Round | 17/09/2016 | Cambridge United | - | Morecambe FC | 1:2 | ||||
| 9. Round | 24/09/2016 | Newport County | - | Cambridge United | 1:2 |  |
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| 10. Round | 27/09/2016 | Cambridge United | - | Yeovil Town | 1:0 | ||||
| 11. Round | 01/10/2016 | Cambridge United | - | Accrington Stanley | 2:1 | ||||
| 12. Round | 08/10/2016 | Blackpool FC | - | Cambridge United | 1:1 | ||||
| 13. Round | 15/10/2016 | Cambridge United | - | Grimsby Town | 0:1 | ||||
| 14. Round | 22/10/2016 | Exeter City | - | Cambridge United | 1:2 | ||||
| 15. Round | 29/10/2016 | Cambridge United | - | Portsmouth FC | 0:1 | ||||
| 39. Round | 25/03/2017 | Cambridge United | - | Stevenage FC | 0:0 | ||||
| 41. Round | 08/04/2017 | Cambridge United | - | Leyton Orient | 3:0 | ||||
| 42. Round | 14/04/2017 | Grimsby Town | - | Cambridge United | 2:1 | ||||
| 43. Round | 17/04/2017 | Cambridge United | - | Exeter City | 1:0 | ||||
| 44. Round | 22/04/2017 | Portsmouth FC | - | Cambridge United | 2:1 |
Northern Ireland