| 11. Round | 24/09/2024 | Gateshead FC | - | Boston United | 2:0 | ||||
| 12. Round | 28/09/2024 | Boston United | - | Maidenhead United | 1:2 | ||||
| 13. Round | 05/10/2024 | Barnet FC | - | Boston United | 3:1 | ||||
| 14. Round | 19/10/2024 | Boston United | - | Halifax Town | 0:1 | ||||
| 15. Round | 23/10/2024 | Boston United | - | AFC Fylde | 1:2 | ||||
| 16. Round | 26/10/2024 | Eastleigh FC | - | Boston United | 1:1 | ||||
| 17. Round | 09/11/2024 | Boston United | - | Dagenham & Redbridge | 1:1 | ||||
| 18. Round | 16/11/2024 | Woking FC | - | Boston United | 1:0 | ||||
| 19. Round | 23/11/2024 | Boston United | - | Braintree Town | 3:1 | ||||
| 20. Round | 26/11/2024 | Oldham Athletic | - | Boston United | 4:0 |  |
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| 21. Round | 30/11/2024 | Ebbsfleet United | - | Boston United | 0:0 | ||||
| 22. Round | 14/12/2024 | Forest Green Rovers | - | Boston United | 1:0 | ||||
| 24. Round | 26/12/2024 | Boston United | - | Solihull Moors | 0:1 |
England