| 15. Round | 01/11/2008 | Walsall FC | - | Northampton Town | 3:1 | ||||
| 16. Round | 15/11/2008 | Northampton Town | - | Oldham Athletic | 0:1 | ||||
| 26. Round | 16/01/2009 | Hartlepool United | - | Northampton Town | 2:0 | ||||
| 32. Round | 14/02/2009 | Oldham Athletic | - | Northampton Town | 2:1 | ||||
| 33. Round | 21/02/2009 | Northampton Town | - | Walsall FC | 0:2 | ||||
| 24. Round | 24/02/2009 | Brighton & Hove Albion | - | Northampton Town | 1:1 |  |
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| 34. Round | 28/02/2009 | Cheltenham Town | - | Northampton Town | 0:1 | ||||
| 36. Round | 07/03/2009 | Northampton Town | - | Tranmere Rovers | 1:1 |
England