| 7. Round | 10/09/2016 | Luton Town | - | Grimsby Town | 1:2 | ||||
| 8. Round | 17/09/2016 | Crawley Town | - | Luton Town | 2:0 | ||||
| 9. Round | 24/09/2016 | Luton Town | - | Doncaster Rovers | 3:1 | ||||
| 10. Round | 27/09/2016 | Hartlepool United | - | Luton Town | 1:1 |  |
|||
| 11. Round | 01/10/2016 | Cheltenham Town | - | Luton Town | 1:1 | ||||
| 12. Round | 08/10/2016 | Luton Town | - | Crewe Alexandra | 1:1 | ||||
| 13. Round | 15/10/2016 | Leyton Orient | - | Luton Town | 1:2 | ||||
| 14. Round | 22/10/2016 | Luton Town | - | Mansfield Town | 1:1 | ||||
| 15. Round | 29/10/2016 | Notts County | - | Luton Town | 0:0 | ||||
| 16. Round | 12/11/2016 | Luton Town | - | Accrington Stanley | 1:0 | ||||
| 17. Round | 19/11/2016 | Morecambe FC | - | Luton Town | 0:2 | ||||
| 18. Round | 22/11/2016 | Luton Town | - | Portsmouth FC | 1:3 | ||||
| 19. Round | 26/11/2016 | Exeter City | - | Luton Town | 0:0 | ||||
| 20. Round | 10/12/2016 | Luton Town | - | Carlisle United | 1:1 | ||||
| 21. Round | 17/12/2016 | Blackpool FC | - | Luton Town | 0:2 | ||||
| 22. Round | 26/12/2016 | Luton Town | - | Colchester United | 0:1 | ||||
| 23. Round | 31/12/2016 | Luton Town | - | Barnet FC | 3:1 |  |
|
||
| 24. Round | 02/01/2017 | Portsmouth FC | - | Luton Town | 1:0 |
England