| 29. Round | 25/01/2025 | Ebbsfleet United | - | Braintree Town | 0:1 | ||||
| 30. Round | 01/02/2025 | Halifax Town | - | Ebbsfleet United | 2:0 | ||||
| 31. Round | 08/02/2025 | Rochdale AFC | - | Ebbsfleet United | 0:0 | ||||
| 32. Round | 15/02/2025 | Ebbsfleet United | - | York City | 0:2 | ||||
| 33. Round | 18/02/2025 | Ebbsfleet United | - | Forest Green Rovers | 0:0 | ||||
| 34. Round | 22/02/2025 | Wealdstone FC | - | Ebbsfleet United | 4:2 | ||||
| 35. Round | 01/03/2025 | Ebbsfleet United | - | Tamworth FC | 2:3 | ||||
| 36. Round | 04/03/2025 | Eastleigh FC | - | Ebbsfleet United | 2:0 | ||||
| 37. Round | 08/03/2025 | Solihull Moors | - | Ebbsfleet United | 2:1 | ||||
| 38. Round | 15/03/2025 | Ebbsfleet United | - | AFC Fylde | 1:0 |  |
|||
| 43. Round | 18/04/2025 | Dagenham & Redbridge | - | Ebbsfleet United | 1:0 | ||||
| 44. Round | 21/04/2025 | Ebbsfleet United | - | Southend United | 0:4 | ||||
| 45. Round | 26/04/2025 | Ebbsfleet United | - | Maidenhead United | 0:2 | ||||
| 46. Round | 05/05/2025 | Oldham Athletic | - | Ebbsfleet United | 2:0 |
England