| 1. Round | 06/08/2016 | Cambridge United | - | Barnet FC | 1:1 |  |
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| 2. Round | 13/08/2016 | Barnet FC | - | Accrington Stanley | 2:0 | ||||
| 3. Round | 16/08/2016 | Barnet FC | - | Blackpool FC | 1:1 | ||||
| 4. Round | 20/08/2016 | Crawley Town | - | Barnet FC | 1:1 | ||||
| 5. Round | 27/08/2016 | Barnet FC | - | Carlisle United | 0:1 | ||||
| 7. Round | 10/09/2016 | Mansfield Town | - | Barnet FC | 0:1 | ||||
| 8. Round | 17/09/2016 | Barnet FC | - | Colchester United | 1:1 | ||||
| 10. Round | 27/09/2016 | Barnet FC | - | Morecambe FC | 2:2 | ||||
| 11. Round | 01/10/2016 | Barnet FC | - | Leyton Orient | 0:0 | ||||
| 12. Round | 08/10/2016 | Doncaster Rovers | - | Barnet FC | 3:2 | ||||
| 13. Round | 15/10/2016 | Barnet FC | - | Exeter City | 1:4 | ||||
| 6. Round | 25/10/2016 | Newport County | - | Barnet FC | 2:2 |  |
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| 18. Round | 22/11/2016 | Plymouth Argyle | - | Barnet FC | 0:2 | ||||
| 20. Round | 10/12/2016 | Yeovil Town | - | Barnet FC | 0:1 | |
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| 21. Round | 17/12/2016 | Barnet FC | - | Stevenage FC | 1:2 | ||||
| 22. Round | 26/12/2016 | Cheltenham Town | - | Barnet FC | 1:2 | ||||
| 23. Round | 31/12/2016 | Luton Town | - | Barnet FC | 3:1 |
England