5. Round | 27/08/2016 | Wycombe Wanderers | - | Colchester United | 0:2 | ||||
12. Round | 08/10/2016 | Colchester United | - | Newport County | 0:0 | ||||
13. Round | 15/10/2016 | Doncaster Rovers | - | Colchester United | 1:0 | ||||
14. Round | 22/10/2016 | Colchester United | - | Morecambe FC | 2:2 | ||||
15. Round | 29/10/2016 | Plymouth Argyle | - | Colchester United | 2:1 | ||||
16. Round | 12/11/2016 | Colchester United | - | Leyton Orient | 0:3 | ||||
17. Round | 19/11/2016 | Yeovil Town | - | Colchester United | 2:1 | ||||
30. Round | 11/02/2017 | Colchester United | - | Barnet FC | 2:1 | ||||
31. Round | 14/02/2017 | Colchester United | - | Crawley Town | 2:3 | ||||
32. Round | 18/02/2017 | Accrington Stanley | - | Colchester United | 2:1 | ||||
37. Round | 14/03/2017 | Colchester United | - | Mansfield Town | 2:0 | ||||
39. Round | 25/03/2017 | Colchester United | - | Luton Town | 2:1 | ||||
43. Round | 17/04/2017 | Morecambe FC | - | Colchester United | 1:1 | ||||
45. Round | 29/04/2017 | Leyton Orient | - | Colchester United | 1:3 | ||||
46. Round | 06/05/2017 | Colchester United | - | Yeovil Town | 2:0 |