| 12. Round | 09/10/2016 | Oxford United | - | AFC Wimbledon | 1:3 | ||||
| 14. Round | 18/10/2016 | Bury FC | - | AFC Wimbledon | 1:2 | ||||
| 27. Round | 14/01/2017 | AFC Wimbledon | - | Oxford United | 2:1 | ||||
| 28. Round | 21/01/2017 | Chesterfield FC | - | AFC Wimbledon | 0:0 | ||||
| 41. Round | 01/04/2017 | Port Vale FC | - | AFC Wimbledon | 2:0 | ||||
| 42. Round | 08/04/2017 | AFC Wimbledon | - | Bristol Rovers | 0:1 | ||||
| 43. Round | 14/04/2017 | Swindon Town | - | AFC Wimbledon | 0:0 | ||||
| 45. Round | 22/04/2017 | Bradford City | - | AFC Wimbledon | 3:0 | ||||
| 46. Round | 30/04/2017 | AFC Wimbledon | - | Oldham Athletic | 0:0 |
England