| 28. Round | 13/01/2007 | Scunthorpe United | - | Oldham Athletic | 1:1 | ||||
| 29. Round | 20/01/2007 | Doncaster Rovers | - | Scunthorpe United | 2:2 | ||||
| 31. Round | 05/02/2007 | Scunthorpe United | - | Bristol City | 1:0 | ||||
| 34. Round | 20/02/2007 | Swansea City | - | Scunthorpe United | 0:2 | ||||
| 36. Round | 03/03/2007 | Brentford FC | - | Scunthorpe United | 0:2 |  |
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| 38. Round | 17/03/2007 | Brighton & Hove Albion | - | Scunthorpe United | 1:1 | ||||
| 40. Round | 31/03/2007 | Scunthorpe United | - | Bradford City | 2:0 | ||||
| 42. Round | 09/04/2007 | Northampton Town | - | Scunthorpe United | 2:1 | ||||
| 43. Round | 14/04/2007 | Scunthorpe United | - | Huddersfield Town | 2:0 | ||||
| 44. Round | 21/04/2007 | Tranmere Rovers | - | Scunthorpe United | 0:2 | ||||
| 45. Round | 28/04/2007 | Blackpool FC | - | Scunthorpe United | 3:1 |
England