| 1. Round | 09/08/2008 | Wycombe Wanderers | - | Morecambe FC | 1:1 | ||||
| 2. Round | 16/08/2008 | Morecambe FC | - | Rotherham United | 1:3 | ||||
| 5. Round | 06/09/2008 | Morecambe FC | - | Shrewsbury Town | 1:0 | ||||
| 6. Round | 13/09/2008 | Barnet FC | - | Morecambe FC | 1:1 | ||||
| 7. Round | 20/09/2008 | Morecambe FC | - | Grimsby Town | 1:1 | ||||
| 8. Round | 27/09/2008 | Lincoln City | - | Morecambe FC | 1:1 | ||||
| 9. Round | 04/10/2008 | Morecambe FC | - | Chesterfield FC | 2:2 | ||||
| 10. Round | 11/10/2008 | Gillingham FC | - | Morecambe FC | 5:0 | ||||
| 16. Round | 15/11/2008 | Chester City | - | Morecambe FC | 1:2 | ||||
| 18. Round | 25/11/2008 | AFC Bournemouth | - | Morecambe FC | 0:0 | ||||
| 19. Round | 06/12/2008 | Notts County | - | Morecambe FC | 1:0 | ||||
| 37. Round | 10/03/2009 | Morecambe FC | - | Bury FC | 0:0 | ||||
| 46. Round | 02/05/2009 | Morecambe FC | - | AFC Bournemouth | 0:4 |
England