| 17. Round | 03/11/2006 | Tranmere Rovers | - | Millwall FC | 3:1 | ||||
| 18. Round | 18/11/2006 | Millwall FC | - | Doncaster Rovers | 2:2 | ||||
| 19. Round | 25/11/2006 | Nottingham Forest | - | Millwall FC | 3:1 |  |
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| 20. Round | 05/12/2006 | Millwall FC | - | Huddersfield Town | 0:0 | ||||
| 21. Round | 09/12/2006 | Millwall FC | - | Bradford City | 2:0 |  |
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| 22. Round | 16/12/2006 | Bristol City | - | Millwall FC | 1:0 | ||||
| 26. Round | 01/01/2007 | Millwall FC | - | Gillingham FC | 4:1 | ||||
| 28. Round | 13/01/2007 | Brighton & Hove Albion | - | Millwall FC | 0:1 | ||||
| 29. Round | 20/01/2007 | Millwall FC | - | Rotherham United | 4:0 | ||||
| 25. Round | 23/01/2007 | Northampton Town | - | Millwall FC | 3:0 | ||||
| 30. Round | 27/01/2007 | Scunthorpe United | - | Millwall FC | 3:0 | ||||
| 31. Round | 03/02/2007 | Yeovil Town | - | Millwall FC | 0:1 | |
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| 46. Round | 05/05/2007 | Bradford City | - | Millwall FC | 2:2 |
England