| 7. Round | 10/09/2011 | Aldershot Town | - | AFC Wimbledon | 1:1 | ||||
| 8. Round | 13/09/2011 | AFC Wimbledon | - | Northampton Town | 0:3 | ||||
| 9. Round | 17/09/2011 | AFC Wimbledon | - | Cheltenham Town | 4:1 | ||||
| 10. Round | 24/09/2011 | Bradford City | - | AFC Wimbledon | 1:2 | ||||
| 11. Round | 01/10/2011 | AFC Wimbledon | - | Gillingham FC | 3:1 | ||||
| 12. Round | 08/10/2011 | Morecambe FC | - | AFC Wimbledon | 1:2 | ||||
| 13. Round | 15/10/2011 | AFC Wimbledon | - | Crewe Alexandra | 1:3 | ||||
| 14. Round | 22/10/2011 | AFC Wimbledon | - | Crawley Town | 2:5 | ||||
| 15. Round | 25/10/2011 | Torquay United | - | AFC Wimbledon | 4:0 | ||||
| 16. Round | 29/10/2011 | Shrewsbury Town | - | AFC Wimbledon | 0:0 | ||||
| 17. Round | 05/11/2011 | AFC Wimbledon | - | Barnet FC | 1:1 | ||||
| 18. Round | 19/11/2011 | AFC Wimbledon | - | Swindon Town | 1:1 | ||||
| 20. Round | 10/12/2011 | AFC Wimbledon | - | Accrington Stanley | 0:2 | ||||
| 24. Round | 02/01/2012 | Swindon Town | - | AFC Wimbledon | 2:0 |  |
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| 26. Round | 14/01/2012 | Port Vale FC | - | AFC Wimbledon | 1:2 | ||||
| 27. Round | 21/01/2012 | Gillingham FC | - | AFC Wimbledon | 3:4 | ||||
| 25. Round | 24/01/2012 | AFC Wimbledon | - | Macclesfield Town | 2:1 | ||||
| 35. Round | 06/03/2012 | AFC Wimbledon | - | Plymouth Argyle | 1:2 |
England