| 7. Round | 18/09/2012 | AFC Wimbledon | - | Torquay United | 0:1 | ||||
| 8. Round | 22/09/2012 | Wycombe Wanderers | - | AFC Wimbledon | 0:1 | ||||
| 9. Round | 29/09/2012 | AFC Wimbledon | - | Accrington Stanley | 1:2 | ||||
| 10. Round | 02/10/2012 | Oxford United | - | AFC Wimbledon | 3:2 | ||||
| 17. Round | 10/11/2012 | York City | - | AFC Wimbledon | 0:3 | ||||
| 18. Round | 17/11/2012 | AFC Wimbledon | - | Aldershot Town | 1:1 |  |
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| 19. Round | 20/11/2012 | AFC Wimbledon | - | Southend United | 0:4 | ||||
| 20. Round | 24/11/2012 | Morecambe FC | - | AFC Wimbledon | 3:1 | ||||
| 21. Round | 08/12/2012 | Barnet FC | - | AFC Wimbledon | 1:1 | ||||
| 36. Round | 02/03/2013 | Cheltenham Town | - | AFC Wimbledon | 2:1 | ||||
| 42. Round | 01/04/2013 | AFC Wimbledon | - | Barnet FC | 0:1 | ||||
| 44. Round | 13/04/2013 | AFC Wimbledon | - | Exeter City | 2:2 | ||||
| 45. Round | 20/04/2013 | Gillingham FC | - | AFC Wimbledon | 2:2 | ||||
| 46. Round | 27/04/2013 | AFC Wimbledon | - | Fleetwood Town | 2:1 | |
England