| 1. Round | 18/08/2012 | Stevenage FC | - | Carlisle United | 1:1 | ||||
| 2. Round | 21/08/2012 | Leyton Orient | - | Stevenage FC | 0:1 | ||||
| 3. Round | 25/08/2012 | Oldham Athletic | - | Stevenage FC | 0:1 | ||||
| 4. Round | 01/09/2012 | Stevenage FC | - | Shrewsbury Town | 1:1 | ||||
| 5. Round | 09/09/2012 | Coventry City | - | Stevenage FC | 1:2 | ||||
| 6. Round | 15/09/2012 | Stevenage FC | - | Crewe Alexandra | 2:2 | ||||
| 7. Round | 18/09/2012 | Stevenage FC | - | Walsall FC | 3:1 | ||||
| 8. Round | 22/09/2012 | Doncaster Rovers | - | Stevenage FC | 1:1 | ||||
| 9. Round | 29/09/2012 | Stevenage FC | - | Bury FC | 2:2 | ||||
| 32. Round | 09/02/2013 | Carlisle United | - | Stevenage FC | 2:1 | ||||
| 23. Round | 12/02/2013 | Brentford FC | - | Stevenage FC | 2:0 | ||||
| 33. Round | 19/02/2013 | Stevenage FC | - | Oldham Athletic | 1:2 | ||||
| 34. Round | 23/02/2013 | Shrewsbury Town | - | Stevenage FC | 2:1 | ||||
| 35. Round | 26/02/2013 | Scunthorpe United | - | Stevenage FC | 1:0 | ||||
| 36. Round | 02/03/2013 | Stevenage FC | - | Colchester United | 0:2 | ||||
| 45. Round | 20/04/2013 | Swindon Town | - | Stevenage FC | 3:0 | ||||
| 46. Round | 27/04/2013 | Stevenage FC | - | Milton Keynes Dons | 0:2 |
England